File list of package libbiojava-java-demos in aramo of architecture all
/usr/share/doc/libbiojava-java-demos/changelog.Debian.gz /usr/share/doc/libbiojava-java-demos/copyright /usr/share/doc/libbiojava-java-demos/examples/ListChangeTypes.java /usr/share/doc/libbiojava-java-demos/examples/RFetch.java /usr/share/doc/libbiojava-java-demos/examples/CircLocTest/CircularLocationTester.java /usr/share/doc/libbiojava-java-demos/examples/CircLocTest/TestFrame.java /usr/share/doc/libbiojava-java-demos/examples/annodb/CreateIndexDB.java /usr/share/doc/libbiojava-java-demos/examples/biosql/DummyFromGFF.java /usr/share/doc/libbiojava-java-demos/examples/biosql/LargeSequenceTest.java /usr/share/doc/libbiojava-java-demos/examples/biosql/SeqDumper.java /usr/share/doc/libbiojava-java-demos/examples/biosql/SeqEMBL.java /usr/share/doc/libbiojava-java-demos/examples/biosql/SeqGFF.java /usr/share/doc/libbiojava-java-demos/examples/biosql/SequenceTest.java /usr/share/doc/libbiojava-java-demos/examples/biosql/UploadFlat.java /usr/share/doc/libbiojava-java-demos/examples/blastxml/BlastParser.java /usr/share/doc/libbiojava-java-demos/examples/blastxml/input.xml /usr/share/doc/libbiojava-java-demos/examples/das/TestDAS.java /usr/share/doc/libbiojava-java-demos/examples/das/TestDASG.java /usr/share/doc/libbiojava-java-demos/examples/das/TestDASH.java /usr/share/doc/libbiojava-java-demos/examples/das/TestDSN.java /usr/share/doc/libbiojava-java-demos/examples/dist/TestDistribution.java /usr/share/doc/libbiojava-java-demos/examples/dist/TestOrderNAlphabet.java /usr/share/doc/libbiojava-java-demos/examples/dist/TestOrderNDistribution.java /usr/share/doc/libbiojava-java-demos/examples/dist/Tools.java /usr/share/doc/libbiojava-java-demos/examples/dp/Dice.java /usr/share/doc/libbiojava-java-demos/examples/dp/PairwiseAlignment.java /usr/share/doc/libbiojava-java-demos/examples/dp/PatternFinder.java /usr/share/doc/libbiojava-java-demos/examples/dp/SearchProfile.java /usr/share/doc/libbiojava-java-demos/examples/dp/ViterbiAlign.java /usr/share/doc/libbiojava-java-demos/examples/dp/fake.fasta /usr/share/doc/libbiojava-java-demos/examples/dp/fakepromoter.xml /usr/share/doc/libbiojava-java-demos/examples/dp/package.html /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/Blast2HTML.java /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/BlastLike2XML.java /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/Fasta2XML.java /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/Pdb2XML.java /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/TutorialEx1.java /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/TutorialEx1Handler.java /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/stylesheets/copyall.xsl /usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/stylesheets/hitlisthtml.xsl /usr/share/doc/libbiojava-java-demos/examples/files/ACTN_HUMAN.uniprot /usr/share/doc/libbiojava-java-demos/examples/files/AF438419.embl /usr/share/doc/libbiojava-java-demos/examples/files/AL121903.embl /usr/share/doc/libbiojava-java-demos/examples/files/AL121903.genbank /usr/share/doc/libbiojava-java-demos/examples/files/ChrI.prom.fasta /usr/share/doc/libbiojava-java-demos/examples/files/NP_001307.gp /usr/share/doc/libbiojava-java-demos/examples/files/fake.fasta /usr/share/doc/libbiojava-java-demos/examples/files/fakepromoter.xml /usr/share/doc/libbiojava-java-demos/examples/files/fp_demo.db /usr/share/doc/libbiojava-java-demos/examples/files/fp_demo.m10 /usr/share/doc/libbiojava-java-demos/examples/files/fp_queries.db /usr/share/doc/libbiojava-java-demos/examples/files/out.gff /usr/share/doc/libbiojava-java-demos/examples/files/scoptest.fa /usr/share/doc/libbiojava-java-demos/examples/files/test.hmm /usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.dna /usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.gff /usr/share/doc/libbiojava-java-demos/examples/files/GCG/blast.report /usr/share/doc/libbiojava-java-demos/examples/files/clustal/keratin.aln /usr/share/doc/libbiojava-java-demos/examples/files/hmmer/plus_tot.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/Massive.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/ReadMe /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/blastn.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/blastp.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/blastx.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/shortBlastn.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/tblastn.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/tblastx.out /usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/unsuppVersionBlastn.out /usr/share/doc/libbiojava-java-demos/examples/files/ontology/biosapiens.obo /usr/share/doc/libbiojava-java-demos/examples/files/ontology/evidence_code.obo /usr/share/doc/libbiojava-java-demos/examples/files/ontology/so.obo /usr/share/doc/libbiojava-java-demos/examples/files/pdb/12E8.pdb /usr/share/doc/libbiojava-java-demos/examples/files/pdb/hgh_ori.pdb /usr/share/doc/libbiojava-java-demos/examples/files/pdb/hmga_1.pdb /usr/share/doc/libbiojava-java-demos/examples/files/pdb/tnf.pdb /usr/share/doc/libbiojava-java-demos/examples/files/wublast/blastn.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/blastp.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/blastx.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_blastn.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_blastp.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_blastx.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_tblastx.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/tblastn.out /usr/share/doc/libbiojava-java-demos/examples/files/wublast/tblastx.out /usr/share/doc/libbiojava-java-demos/examples/game/AE002734.game /usr/share/doc/libbiojava-java-demos/examples/game/README.txt /usr/share/doc/libbiojava-java-demos/examples/game/SeqIOTatler.java /usr/share/doc/libbiojava-java-demos/examples/game/TestGAME.java /usr/share/doc/libbiojava-java-demos/examples/gff/AL121903.embl /usr/share/doc/libbiojava-java-demos/examples/gff/EmblToGffFasta.java /usr/share/doc/libbiojava-java-demos/examples/gff/GFFCompare.java /usr/share/doc/libbiojava-java-demos/examples/gff/GFFFilter.java /usr/share/doc/libbiojava-java-demos/examples/gff/GFFMask.java /usr/share/doc/libbiojava-java-demos/examples/gff/GFFToFeatures.java /usr/share/doc/libbiojava-java-demos/examples/gff/GenbankToGffFasta.java /usr/share/doc/libbiojava-java-demos/examples/gff/SwissprotToGffFasta.java /usr/share/doc/libbiojava-java-demos/examples/gff/XFF2GFF.java /usr/share/doc/libbiojava-java-demos/examples/gff/varC4-2.gff /usr/share/doc/libbiojava-java-demos/examples/indexing/CreateFAIndex.java /usr/share/doc/libbiojava-java-demos/examples/indexing/CreateIndex.java /usr/share/doc/libbiojava-java-demos/examples/indexing/CreateSPIndex.java /usr/share/doc/libbiojava-java-demos/examples/indexing/ListIDs.java /usr/share/doc/libbiojava-java-demos/examples/indexing/ReadRaw.java /usr/share/doc/libbiojava-java-demos/examples/indexing/ReadRawSecondary.java /usr/share/doc/libbiojava-java-demos/examples/nativeapps/BlastLike2XML.java /usr/share/doc/libbiojava-java-demos/examples/nativeapps/Pdb2XML.java /usr/share/doc/libbiojava-java-demos/examples/ontology/obo/ParseBioSapiensOntology.java /usr/share/doc/libbiojava-java-demos/examples/performance/AlignProteins.java /usr/share/doc/libbiojava-java-demos/examples/performance/ReadFasta.java /usr/share/doc/libbiojava-java-demos/examples/performance/ReadFastaX.java /usr/share/doc/libbiojava-java-demos/examples/performance/ReadFastaX2.java /usr/share/doc/libbiojava-java-demos/examples/performance/ReverseComplement.java /usr/share/doc/libbiojava-java-demos/examples/performance/SmithWatermanExample.java /usr/share/doc/libbiojava-java-demos/examples/performance/UserDisplay.java /usr/share/doc/libbiojava-java-demos/examples/performance/package.html /usr/share/doc/libbiojava-java-demos/examples/process/ProcessToolsTest.java /usr/share/doc/libbiojava-java-demos/examples/prot/TestDigestIO.java /usr/share/doc/libbiojava-java-demos/examples/search/IndexFastaDB.java /usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.embl /usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.genbank /usr/share/doc/libbiojava-java-demos/examples/seq/FetchSeq.java /usr/share/doc/libbiojava-java-demos/examples/seq/GCContent.java /usr/share/doc/libbiojava-java-demos/examples/seq/MotifFinder2.java /usr/share/doc/libbiojava-java-demos/examples/seq/ReverseComplement.java /usr/share/doc/libbiojava-java-demos/examples/seq/SimpleAssemblyTest.java /usr/share/doc/libbiojava-java-demos/examples/seq/TestEmbl.java /usr/share/doc/libbiojava-java-demos/examples/seq/TestEmbl2.java /usr/share/doc/libbiojava-java-demos/examples/seq/TestGenbank.java /usr/share/doc/libbiojava-java-demos/examples/seq/TestRefSeqPrt.java /usr/share/doc/libbiojava-java-demos/examples/seq/TestSubSequence.java /usr/share/doc/libbiojava-java-demos/examples/seq/TestSwissprot.java /usr/share/doc/libbiojava-java-demos/examples/seq/TestTranslation.java /usr/share/doc/libbiojava-java-demos/examples/seq/UniProtDemo.java /usr/share/doc/libbiojava-java-demos/examples/seq/utrs.fa /usr/share/doc/libbiojava-java-demos/examples/seq/db/AddFilesToIndex.java /usr/share/doc/libbiojava-java-demos/examples/seq/db/CreateIndex.java /usr/share/doc/libbiojava-java-demos/examples/seq/db/FetchSequence.java /usr/share/doc/libbiojava-java-demos/examples/seq/db/ListSeqsInIndex.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/BeadDemo.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/CircularEmblViewer.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/EmblViewer.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/EmblViewer2.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/FastBeadDemo.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/GappedViewer.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/TraceViewer.java /usr/share/doc/libbiojava-java-demos/examples/seqviewer/test.fa /usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateDNAFastaHashTable.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateDNAFastaHashTableCompact.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateDNAFastaHashTableLarge.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateEmblHashTable.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateEmblHashTableLarge.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/ResultPrinter.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHA.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHALarge.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHASeq.java /usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHASeqLarge.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/AlignmentBuilder.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/CountHits.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/CountSubHits.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/Echoer.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/FilterByValue.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/ListQueries.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/ListSubjects.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/ProcessBlastReport.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/PropertyEchoer.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/SubHitBuilder.java /usr/share/doc/libbiojava-java-demos/examples/ssbind/SubHitFilter.java /usr/share/doc/libbiojava-java-demos/examples/structure/LoadStructure.java /usr/share/doc/libbiojava-java-demos/examples/structure/PDBView.java /usr/share/doc/libbiojava-java-demos/examples/structure/PhiPsiCalculation.java /usr/share/doc/libbiojava-java-demos/examples/structure/SuperimposeStructures.java /usr/share/doc/libbiojava-java-demos/examples/symbol/MatrixValue.java /usr/share/doc/libbiojava-java-demos/examples/symbol/PatternDemo.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestAlphabetIndexers.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestAmbiguity.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestGappedSymbolList.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestIndexedIntegers.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestLocation.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestOrderNSymbolList.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestSimpleAlignment.java /usr/share/doc/libbiojava-java-demos/examples/symbol/TestWindowedSymbolList.java /usr/share/doc/libbiojava-java-demos/examples/symbol/Tools.java /usr/share/doc/libbiojava-java-demos/examples/symbol/WindowCount.java /usr/share/doc/libbiojava-java-demos/examples/tagvalue/Grep.java /usr/share/doc/libbiojava-java-demos/examples/tagvalue/Index.java /usr/share/doc/libbiojava-java-demos/examples/tagvalue/Parse.java /usr/share/doc/libbiojava-java-demos/examples/tagvalue/ParseEmbl.java /usr/share/doc/libbiojava-java-demos/examples/tagvalue/ParseSwissprot.java /usr/share/doc/libbiojava-java-demos/examples/tagvalue/PrintFormat.java /usr/share/doc/libbiojava-java-demos/examples/unigene/CreateUnigeneFlat.java /usr/share/doc/libbiojava-java-demos/examples/unigene/ParseLibInfo.java /usr/share/doc/libbiojava-java-demos/examples/unigene/ParseUnigene.java /usr/share/doc/libbiojava-java-demos/examples/unigene/SearchUnigeneFlat.java /usr/share/doc/libbiojava-java-demos/examples/xff/TestXFFStreaming.java