File list of package trinityrnaseq-examples in aramo of architecture all
/usr/lib/trinityrnaseq/sample_data /usr/share/doc/trinityrnaseq-examples/changelog.Debian.gz /usr/share/doc/trinityrnaseq-examples/copyright /usr/share/trinityrnaseq/sample_data/Makefile /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/Makefile /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/README /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/cleanme.pl /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/longReads.fa /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fa.gz /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fq.gz /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fa.gz /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fq.gz /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.left.fq.gz /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.right.fq.gz /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/runMe.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.PE.txt /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.SE.txt /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/test_FL.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/align_reads_via_bowtie.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/bowtie2.sam.aligned.bam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa.gene_trans_map /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.IGV.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex02.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/example2.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex03.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/example3.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex04.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/example4.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex05.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/example5.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.Bfly.dot /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.bed /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex06.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/example6.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex07.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/example7.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex08.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/example8.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex09.refSeq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.left.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.right.fq /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/example9.png /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam.adj /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/runMe.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.diff_kmer_length.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.noSeqtk.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_CuffFly.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_PasaFly.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_as_DS.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_bowtie_components.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_docker.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_full_cleanup.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_include_long_reads.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_cleanup.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_para_iworm.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon_no_cleanup.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_symlinks.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_parallel_iworm_assembly.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_piecemeal.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_trin_complete.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_bowtie2.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_my_ramdisk.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_workdir.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_LSF.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_SGE.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_wSuperReads.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_w_monitoring.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalization.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalize_libs_separately.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.min_kmer_cov_3.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_SE_samples_file.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_abundance_estimation_include_antisense.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe.singleFQ.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_NO_normalization.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_docker.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_include_normalization.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_lenient_path_extension.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_with_jaccard_clip.sh /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/runMe_no_qualTrim.sh /usr/share/trinityrnaseq/trinity_ext_sample_data/Makefile /usr/share/trinityrnaseq/trinity_ext_sample_data/README.md /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/both.fa.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/inchworm.K25.L25.fa.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/iworm_scaffolds.txt.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/runMe.sh /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/Makefile /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/ensure_min_asm.pl /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_1.fastq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_2.fastq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.left.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.left.stripped.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.right.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.right.stripped.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.left.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.left.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.right.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.right.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.left.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.left.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.right.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.right.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.left.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.left.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.right.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.right.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.left.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.left.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.right.fq /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.right.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gene_trans_map /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.TMM.EXPR.matrix /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.counts.matrix /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.samples.txt /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/gsnap.cSorted.bam /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/gsnap.cSorted.bam.bai /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.left.fa.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.left.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.right.fa.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.right.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads2.left.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads2.right.fq.gz /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/salmon-quasi-trans.isoform.TMM.EXPR.matrix /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chromosome /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chromosome.iit /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chrsubset /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.contig /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.contig.iit /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomebits128 /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomecomp /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64meta /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64strm /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133positions /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildexc /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildguide1024 /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64meta /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64strm /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpchilddc /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpexc /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpguide1024 /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sarray /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.version /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Makefile /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Makefile /usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Trinity_trans.TMM.EXPR.matrix 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