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Package: paleomix (1.3.6-1)

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paleomix

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Download Source Package paleomix:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Étienne Mollier

External Resources:

Similar packages:

pipelines and tools for the processing of ancient and modern HTS data

The PALEOMIX pipelines are a set of pipelines and tools designed to aid the rapid processing of High-Throughput Sequencing (HTS) data: The BAM pipeline processes de-multiplexed reads from one or more samples, through sequence processing and alignment, to generate BAM alignment files useful in downstream analyses; the Phylogenetic pipeline carries out genotyping and phylogenetic inference on BAM alignment files, either produced using the BAM pipeline or generated elsewhere; and the Zonkey pipeline carries out a suite of analyses on low coverage equine alignments, in order to detect the presence of F1-hybrids in archaeological assemblages. In addition, PALEOMIX aids in metagenomic analysis of the extracts.

The pipelines have been designed with ancient DNA (aDNA) in mind, and includes several features especially useful for the analyses of ancient samples, but can all be for the processing of modern samples, in order to ensure consistent data processing.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 948.9 kB1992 kB [list of files]
arm64 948.9 kB1992 kB [list of files]
ppc64el 948.9 kB1992 kB [list of files]