Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> alien-hunter
etiona  ] [  nabia  ] [  aramo  ]
[ Source: alien-hunter  ]

Package: alien-hunter (1.7-8)

Links for alien-hunter

alien-hunter

Trisquel Resources:

Download Source Package alien-hunter:

Maintainer:

Original Maintainers:

External Resources:

Similar packages:

Interpolated Variable Order Motifs to identify horizontally acquired DNA

Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.

Other Packages Related to alien-hunter

  • depends
  • recommends
  • suggests
  • sug: bioperl
    Perl tools for computational molecular biology

Download alien-hunter

Download for all available architectures
Architecture Package Size Installed Size Files
all 27.7 kB112 kB [list of files]