Package: concavity (0.1+dfsg.1-5)

Links for concavity

Trisquel Resources:

Download Source Package concavity:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Laszlo Kajan
Andreas Tille

External Resources:

Homepage [compbio.cs.princeton.edu]

Similar packages:

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Other Packages Related to concavity

depends

recommends

suggests

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.0) [not armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libstdc++6 (>= 5)

GNU Standard C++ Library v3

sug: conservation-code

protein sequence conservation scoring tool
sug: pymol

Molecular Graphics System

Download concavity

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	241.7 kB	980 kB	[list of files]
arm64	224.2 kB	940 kB	[list of files]
armhf	213.9 kB	808 kB	[list of files]
ppc64el	265.2 kB	1193 kB	[list of files]

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