[ aramo ]
[ Source: covtobed ]
Package: covtobed (1.3.5+dfsg-1)
Links for covtobed
Trisquel Resources:
Download Source Package covtobed:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Shayan Doust
- Nilesh Patra
External Resources:
- Homepage [github.com]
Similar packages:
convert the coverage track from a BAM file into a BED file
Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.
Other Packages Related to covtobed
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- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [not armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 11) [not armhf]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 5.2) [armhf]
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- dep: zlib1g
- compression library - runtime
Download covtobed
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 42.8 kB | 122 kB | [list of files] |
| arm64 | 40.1 kB | 102 kB | [list of files] |
| armhf | 48.1 kB | 93 kB | [list of files] |
| ppc64el | 47.6 kB | 146 kB | [list of files] |