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Package: embassy-domsearch (1:0.1.660-3)

Extra EMBOSS commands to search for protein domains

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).

Other Packages Related to embassy-domsearch

  • depends
  • recommends
  • suggests
  • dep: emboss-lib (<< 6.6.1~)
    EMBOSS Libraries
    dep: emboss-lib (>= 6.6.0-1~)
  • dep: libc6 (>= 2.17) [arm64, ppc64el]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [amd64, armhf]
  • dep: libx11-6
    X11 client-side library
  • rec: emboss
    European molecular biology open software suite
  • sug: embassy
    Package not available

Download embassy-domsearch

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 60.4 kB604 kB [list of files]
arm64 58.8 kB576 kB [list of files]
armhf 58.2 kB556 kB [list of files]
ppc64el 60.9 kB833 kB [list of files]