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Package: ggd-utils (1.0.0+ds-1)

programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Other Packages Related to ggd-utils

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb

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Architecture Package Size Installed Size Files
amd64 1,809.6 kB4933 kB [list of files]
arm64 1,633.2 kB4765 kB [list of files]
armhf 1,594.1 kB4335 kB [list of files]
ppc64el 1,519.1 kB4775 kB [list of files]