[ Source: kissplice ]
Package: kissplice (2.5.5+dfsg-1)
Links for kissplice
Trisquel Resources:
Download Source Package kissplice:
- [kissplice_2.5.5+dfsg-1.dsc]
- [kissplice_2.5.5+dfsg.orig.tar.xz]
- [kissplice_2.5.5+dfsg-1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- David Parsons
- Andreas Tille
External Resources:
- Homepage [kissplice.prabi.fr]
Similar packages:
Detection of various kinds of polymorphisms in RNA-seq data
KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.
Other Packages Related to kissplice
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- dep: bcalm
- de Bruijn compaction in low memory
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download kissplice
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 610.5 kB | 2087 kB | [list of files] |
| arm64 | 607.6 kB | 2065 kB | [list of files] |
| ppc64el | 624.9 kB | 2619 kB | [list of files] |