[ Source: nanopolish ]
Package: nanopolish (0.13.3-2)
Links for nanopolish
Trisquel Resources:
Download Source Package nanopolish:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
Other Packages Related to nanopolish
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgomp1 (>= 6)
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- dep: libhdf5-103-1
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- dep: libhts3 (>= 1.10)
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- dep: libstdc++6 (>= 11)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4) [not arm64]
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- rec: python3-biopython
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Download nanopolish
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 2,407.7 kB | 9591 kB | [list of files] |
| arm64 | 2,367.8 kB | 9342 kB | [list of files] |
| armhf | 2,359.0 kB | 9001 kB | [list of files] |
| ppc64el | 2,447.0 kB | 9859 kB | [list of files] |