[ Source: pbbam ]
Package: pbbamtools (2.0.0+dfsg-2)
Links for pbbamtools
Trisquel Resources:
Download Source Package pbbam:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [pbbam.readthedocs.org]
Similar packages:
processing Pacific Biosciences binary alignment/map files
The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group.
PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information.
This package provides command-line utilities for working with PacBio BAM files.
Other Packages Related to pbbamtools
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libpbbam2.0.0 (= 2.0.0+dfsg-2)
- Pacific Biosciences binary alignment/map (BAM) library
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- dep: libpbcopper2.0.0 (>= 2.0.0+dfsg)
- data structures, algorithms, and utilities for C++ applications
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
Download pbbamtools
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 99.8 kB | 383 kB | [list of files] |
| arm64 | 93.1 kB | 335 kB | [list of files] |
| ppc64el | 105.8 kB | 619 kB | [list of files] |