[ aramo ]
[ Source: pyensembl ]
Package: pyensembl (1.9.4+ds-1)
Links for pyensembl
Trisquel Resources:
Download Source Package pyensembl:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
External Resources:
- Homepage [github.com]
Similar packages:
installs data from the Ensembl genome database
The Ensembl genome database is an established reference for genomic sequences and their automated annotation. To have this data local has advantages for bulk analyses, e.g. for the mapping of reads from RNA-seq against the latest golden path - or a previous one to compare analyses.
This package provides a reproducible way to insatll this data and thus simplify the automation of respective workflows.
Other Packages Related to pyensembl
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-datacache
- helpers for transparently downloading datasets
-
- dep: python3-gtfparse
- parser for gene transfer format (aka GFF2)
-
- dep: python3-memoized-property
- decorator to avoid redundant computation
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-serializable
- base class with serialization methods
-
- dep: python3-six (>= 1.9.0)
- Python 2 and 3 compatibility library (Python 3 interface)
-
- dep: python3-typechecks
- express constraints on types
Download pyensembl
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 35.1 kB | 204 kB | [list of files] |