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Package: scoary (1.6.16-3)

pangenome-wide association studies

Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the associations between all genes in the accessory genome and the traits. It reports a list of genes sorted by strength of association per trait.

Other Packages Related to scoary

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    dep: python3 (>= 3.2)
  • dep: python3-pkg-resources
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  • dep: python3-scipy
    scientific tools for Python 3
  • sug: roary
    high speed stand alone pan genome pipeline

Download scoary

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Architecture Package Size Installed Size Files
all 231.8 kB2681 kB [list of files]