[ Source: sga ]
Package: sga (0.10.15-7)
Links for sga
Trisquel Resources:
Download Source Package sga:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Michael R. Crusoe
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Other Packages Related to sga
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1) [not armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 6) [amd64, armhf]
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 11) [amd64, armhf]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 5.2) [arm64, ppc64el]
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- rec: abyss
- Package not available
Download sga
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 637.4 kB | 1683 kB | [list of files] |
| arm64 | 72.4 kB | 234 kB | [list of files] |
| armhf | 649.0 kB | 1242 kB | [list of files] |
| ppc64el | 78.4 kB | 318 kB | [list of files] |