[ nabia ]
[ aramo ]
[ Source: skesa ]
Package: skesa (2.4.0-3)
Links for skesa
Trisquel Resources:
Download Source Package skesa:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
strategic Kmer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.
Other Packages Related to skesa
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libncbi-vdb2 (>= 2.11.2+dfsg)
- libraries for using data in the INSDC Sequence Read Archives
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: libzstd1 (>= 1.4.0)
- fast lossless compression algorithm
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download skesa
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 707.0 kB | 2479 kB | [list of files] |