Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> sprai
etiona  ] [  aramo  ]
[ Source: sprai  ]

Package: sprai (0.9.9.23+dfsg1-2)

single-pass sequencing read accuracy improver

Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Other Packages Related to sprai

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.17) [arm64, ppc64el]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7) [amd64, armhf]
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: time
    GNU time program for measuring CPU resource usage
  • sug: make
    utility for directing compilation
  • sug: pbalign
    Package not available
  • sug: pbgenomicconsensus
    Package not available
  • sug: pbh5tools
    Package not available

Download sprai

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,474.9 kB1710 kB [list of files]
arm64 1,472.5 kB1694 kB [list of files]
armhf 1,470.3 kB1666 kB [list of files]
ppc64el 1,478.5 kB1882 kB [list of files]