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Package: swarm (3.1.0+dfsg-1)

robust and fast clustering method for amplicon-based studies

The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold d, the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information.

Other Packages Related to swarm

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • rec: python3
    interactive high-level object-oriented language (default python3 version)

Download swarm

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 613.9 kB736 kB [list of files]
arm64 610.1 kB715 kB [list of files]
ppc64el 614.4 kB771 kB [list of files]