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Package: umis (1.0.8-1build1)

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

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    dep: libc6 (>= 2.4) [amd64, armhf]
  • dep: python3
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    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-click
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  • dep: python3-pandas
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  • dep: python3-scipy
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  • dep: python3-toolz
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  • sug: umis-examples
    tools for processing UMI RNA-tag data (examples)

Download umis

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 24.9 kB110 kB [list of files]
arm64 24.6 kB106 kB [list of files]
armhf 24.0 kB101 kB [list of files]
ppc64el 25.3 kB154 kB [list of files]