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Package: unikmer (0.18.8-1)

Toolkit for nucleic acid k-mer analysis

unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, providing functions including set operation k-mers optional with TaxIDs but without count information.

K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik.

TaxIDs can be assigned when counting k-mers from genome sequences, and LCA (Lowest Common Ancestor) is computed during set opertions including computing union, intersecton, set difference, unique and repeated k-mers.

Other Packages Related to unikmer

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 2,447.7 kB7150 kB [list of files]
arm64 2,189.5 kB6910 kB [list of files]
armhf 2,169.1 kB6297 kB [list of files]
ppc64el 2,054.4 kB6951 kB [list of files]