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Пакет: r-cran-spp (1.16.0-2)

Връзки за r-cran-spp

r-cran-spp

Ресурси за Trisquel:

Изтегляне на пакет-източник r-cran-spp.

Отговорник:

Original Maintainers:

  • Debian R Packages Maintainers
  • Andreas Tille

Външни препратки:

Подобни пакети:

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data 

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

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  • dep: r-api-4.0
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  • dep: r-base-core (>= 4.0.2-1build1)
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  • dep: r-bioc-rsamtools
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  • dep: r-cran-bh (>= 1.66)
    (Virtual) GNU R package to provide BH
  • dep: r-cran-catools
    GNU R package providing various utility functions
  • dep: r-cran-rcpp
    GNU R package for Seamless R and C++ Integration
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

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