Paket: jellyfish (2.3.0-12ubuntu2)
Links für jellyfish
Trisquel-Ressourcen:
Quellcode-Paket jellyfish herunterladen:
- [jellyfish_2.3.0-12ubuntu2.dsc]
- [jellyfish_2.3.0.orig.tar.gz]
- [jellyfish_2.3.0-12ubuntu2.debian.tar.xz]
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
- Étienne Mollier
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Andere Pakete mit Bezug zu jellyfish
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libjellyfish-2.0-2 (= 2.3.0-12ubuntu2)
- count k-mers in DNA sequences (dynamic library of jellyfish)
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
jellyfish herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 757,3 kB | 2220 kB | [Liste der Dateien] |