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Paket: python3-pyspoa (0.0.8-2build1)

Python bindings to spoa

Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).

This package presents Python bindings for the spoa library

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  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libspoa7.0.0 (>= 4.0.5+ds)
    SIMD partial order alignment library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3 (<< 3.11)
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (>= 3.10~)
  • dep: python3-pybind11
    pybind11 helper module for Python 3

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