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Paket: blasr (5.3.5+dfsg-3build1)

mapping single-molecule sequencing reads

Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. Such reads are thousands of bases long, with divergence between them and the genome being dominated by insertion and deletion error.

Andere Pakete mit Bezug zu blasr

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  • empfiehlt
  • schlägt vor
  • dep: libblasr5.3.5 (>= 5.3.5+dfsg)
    tools for aligning PacBio reads to target sequences
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libhdf5-cpp-103-1 (>= 1.10.5)
    HDF5 - C++ runtime files - serial version
  • dep: libpbbam2.0.0 (>= 2.0.0+dfsg)
    Pacific Biosciences binary alignment/map (BAM) library
  • dep: libpbcopper2.0.0 (>= 2.0.0+dfsg)
    data structures, algorithms, and utilities for C++ applications
  • dep: libpbseq
    library for analyzing PacBio sequencing data
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3

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