[ aramo ]
[ Quellcode: ivar ]
Paket: ivar (1.3.1+dfsg-4)
Links für ivar
Trisquel-Ressourcen:
Quellcode-Paket ivar herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Andreas Tille
- Étienne Mollier
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
Andere Pakete mit Bezug zu ivar
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
ivar herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| arm64 | 194,4 kB | 1363 kB | [Liste der Dateien] |