[ etiona ]
[ aramo ]
[ Quellcode: discosnp ]
Paket: discosnp (1:2.6.2-1)
Links für discosnp
Trisquel-Ressourcen:
Quellcode-Paket discosnp herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Olivier Sallou
- Andreas Tille
Externe Ressourcen:
- Homepage [colibread.inria.fr]
Ähnliche Pakete:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
Andere Pakete mit Bezug zu discosnp
|
|
|
-
- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
-
- dep: libgatbcore3 (>= 1.4.2) [amd64]
- dynamic library of the Genome Analysis Toolbox
- dep: libgatbcore3 (>= 1.4.2+dfsg) [nicht amd64]
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
discosnp herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 1.414,6 kB | 2617 kB | [Liste der Dateien] |
| arm64 | 1.408,8 kB | 2569 kB | [Liste der Dateien] |
| ppc64el | 1.444,1 kB | 2925 kB | [Liste der Dateien] |