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[ Quellcode: kleborate ]
Paket: kleborate (2.2.0-1)
Links für kleborate
Trisquel-Ressourcen:
Quellcode-Paket kleborate herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Andreas Tille
- Étienne Mollier
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
tool to screen Klebsiella genome assemblies
Kleborate is a tool to screen Klebsiella genome assemblies for:
* MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
Andere Pakete mit Bezug zu kleborate
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- dep: kaptive
- obtain information about K and O types for Klebsiella genome assemblies
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- dep: kaptive-data
- reference data for kaptive for Klebsiella genome assemblies
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-distutils
- distutils package for Python 3.x
kleborate herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 8.571,3 kB | 62499 kB | [Liste der Dateien] |
| arm64 | 8.571,3 kB | 62499 kB | [Liste der Dateien] |
| ppc64el | 8.570,5 kB | 65523 kB | [Liste der Dateien] |