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Paket: last-align (1260-1)

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last-align

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Quellcode-Paket last-align herunterladen:

Betreuer:

Original Maintainers:

  • Debian Med Packaging Team (E-Mail-Archiv)
  • Charles Plessy
  • Andreas Tille
  • Nilesh Patra

Externe Ressourcen:

Ähnliche Pakete:

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at: 

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Andere Pakete mit Bezug zu last-align

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]
    GCC support library
    dep: libgcc-s1 (>= 3.3.1) [amd64]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: parallel
    build and execute command lines from standard input in parallel
  • rec: python3-pil
    Python Imaging Library (Python3)

last-align herunterladen

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amd64 1.901,2 kB18255 kB [Liste der Dateien]
arm64 791,1 kB3364 kB [Liste der Dateien]
armhf 742,2 kB2556 kB [Liste der Dateien]
ppc64el 862,0 kB4484 kB [Liste der Dateien]