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[ Quellcode: nanopolish  ]

Paket: nanopolish (0.13.3-2)

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nanopolish

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consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Andere Pakete mit Bezug zu nanopolish

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  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
    GCC support library
    dep: libgcc-s1 (>= 3.4.4) [ppc64el]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libhdf5-103-1
    HDF5 C runtime files - serial version
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4) [nicht arm64]
    compression library - runtime
    dep: zlib1g (>= 1:1.2.3.3) [arm64]
  • rec: python3-biopython
    Python3 library for bioinformatics
  • rec: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • sug: make
    utility for directing compilation
  • sug: perl
    Larry Wall's Practical Extraction and Report Language

nanopolish herunterladen

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amd64 2.407,7 kB9591 kB [Liste der Dateien]
arm64 2.367,8 kB9342 kB [Liste der Dateien]
armhf 2.359,0 kB9001 kB [Liste der Dateien]
ppc64el 2.447,0 kB9859 kB [Liste der Dateien]