Skip to content
Sections
>> Trisquel >> Pakete >> aramo >> science >> bitseq
[  etiona  ] [  nabia  ] [  aramo  ]
[ Quellcode: bitseq  ]

Paket: bitseq (0.7.5+dfsg-6)

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Andere Pakete mit Bezug zu bitseq

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.4.4) [ppc64el]
    dep: libgcc-s1 (>= 3.5) [armhf]
    dep: libgcc-s1 (>= 4.2) [arm64]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: samtools
    processing sequence alignments in SAM, BAM and CRAM formats

bitseq herunterladen

Download für alle verfügbaren Architekturen
Architektur Paketgröße Größe (installiert) Dateien
amd64 358,0 kB1507 kB [Liste der Dateien]
arm64 335,9 kB1291 kB [Liste der Dateien]
armhf 329,0 kB1154 kB [Liste der Dateien]
ppc64el 390,7 kB2087 kB [Liste der Dateien]