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[ Quellcode: pbalign ]
Paket: python-pbalign (0.3.0-1)
Links für python-pbalign
Trisquel-Ressourcen:
Quellcode-Paket pbalign herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Afif Elghraoui
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
map Pacific Biosciences reads to reference DNA sequences (Python2)
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.
pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.
Andere Pakete mit Bezug zu python-pbalign
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- dep: blasr (>= 5.3+0)
- mapping single-molecule sequencing reads
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: python-pbcommand
- common command-line interface for Pacific Biosciences analysis modules
-
- dep: python-pbcore
- Python library for processing PacBio data files
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- dep: python-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 2)
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- rec: hdf5-tools
- Hierarchical Data Format 5 (HDF5) - Runtime tools
-
- rec: python-pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
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- sug: bowtie2
- ultrafast memory-efficient short read aligner
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- sug: gmap
- Paket nicht verfügbar
-
- sug: pbalign-doc
- documentation for pbalign
python-pbalign herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 36,3 kB | 225 kB | [Liste der Dateien] |