Paket: jellyfish (2.2.8-3build1)
Links für jellyfish
Trisquel-Ressourcen:
Quellcode-Paket jellyfish herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
Externe Ressourcen:
- Homepage [www.cbcb.umd.edu]
Ähnliche Pakete:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Andere Pakete mit Bezug zu jellyfish
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libjellyfish-2.0-2 (= 2.2.8-3build1)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
jellyfish herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 349,3 kB | 606 kB | [Liste der Dateien] |