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[ Quellcode: optimir ]
Paket: optimir (1.0-2)
Links für optimir
Trisquel-Ressourcen:
Quellcode-Paket optimir herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Dylan Aïssi
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.
Andere Pakete mit Bezug zu optimir
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- rec: r-cran-gridextra
- GNU R package with extensions for the grid package
optimir herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 1.003,8 kB | 7404 kB | [Liste der Dateien] |