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[ Quellcode: prokka ]
Paket: prokka (1.14.5+dfsg-2)
Links für prokka
Trisquel-Ressourcen:
Quellcode-Paket prokka herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Michael R. Crusoe
- Andreas Tille
Externe Ressourcen:
- Homepage [www.vicbioinformatics.com]
Ähnliche Pakete:
rapid annotation of prokaryotic genomes
A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.
Andere Pakete mit Bezug zu prokka
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- dep: aragorn
- tRNA and tmRNA detection in nucleotide sequences
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- dep: default-jre
- Standard Java or Java compatible Runtime
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- dep: hmmer
- profile hidden Markov models for protein sequence analysis
-
- dep: infernal
- inference of RNA secondary structural alignments
-
- dep: less
- pager program similar to more
-
- dep: libbio-perl-perl
- BioPerl core perl modules
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- dep: libbio-searchio-hmmer-perl
- perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
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- dep: libswiss-perl
- Perl API to the UniProt database
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- dep: libxml-simple-perl
- Perl module for reading and writing XML
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- dep: ncbi-blast+ (>= 2.8)
- next generation suite of BLAST sequence search tools
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- dep: ncbi-tools-bin
- NCBI libraries for biology applications (text-based utilities)
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- dep: parallel
- build and execute command lines from standard input in parallel
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- dep: prodigal
- Microbial (bacterial and archaeal) gene finding program
prokka herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 9.730,8 kB | 92547 kB | [Liste der Dateien] |