Paket: tophat-recondition (1.4-1)

Links für tophat-recondition

Trisquel-Ressourcen:

Quellcode-Paket tophat-recondition herunterladen:

Betreuer:

Steffen Moeller

Original Maintainer:

Steffen Moeller

Externe Ressourcen:

Homepage [github.com]

post-processor for TopHat unmapped reads

tophat-recondition is a post-processor for TopHat unmapped reads (contained in unmapped.bam), making them compatible with downstream tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It also works around bugs in TopHat:

 * the "mate is unmapped" SAM flag is not set on any reads in the
   unmapped.bam file (TopHat issue #3)
 * the mapped mate of an unmapped read can be absent from
   accepted_hits.bam, creating a mismatch between the file and the unmapped
   read's flags (TopHat issue #16)

Andere Pakete mit Bezug zu tophat-recondition

hängt ab von

empfiehlt

schlägt vor

dep: python3

interactive high-level object-oriented language (default python3 version)

sug: tophat2

Paket nicht verfügbar

tophat-recondition herunterladen

Download für alle verfügbaren Architekturen
Architektur	Paketgröße	Größe (installiert)	Dateien
all	9,2 kB	34 kB	[Liste der Dateien]

Sections