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Paket: libmems1 (1.6.0+4725-8build1)

library to support DNA string matching and comparative genomics

libMems is a freely available software development library to support DNA string matching and comparative genomics. Among other things, libMems implements an algorithm to perform approximate multi-MUM and multi-MEM identification. The algorithm uses spaced seed patterns in conjunction with a seed-and-extend style hashing method to identify matches. The method is efficient, requiring a maximum of only 16 bytes per base of the largest input sequence, and this data can be stored externally (i.e. on disk) to further reduce memory requirements.

This package contains the dynamic library.

Andere Pakete mit Bezug zu libmems1

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  • dep: libboost-filesystem1.71.0
    filesystem operations (portable paths, iteration over directories, etc) in C++
  • dep: libboost-iostreams1.71.0
    Boost.Iostreams Library
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libgcc-s1 (>= 3.4) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgenome0 [armhf]
    toolkit for developing bioinformatic related software
    dep: libgenome0 (>= 1.3.11+svn20110227.4616) [amd64]
  • dep: libmuscle1 (>= 3.7+4565)
    multiple alignment library for protein sequences
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3

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amd64 656,3 kB1992 kB [Liste der Dateien]
armhf 539,4 kB1237 kB [Liste der Dateien]