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[ Source: mafft  ]

Package: mafft (7.490-1)

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mafft

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Download Source Package mafft:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille
  • Nilesh Patra

External Resources:

Similar packages:

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: 

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods: 
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

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Download mafft

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 757.5 kB3665 kB [list of files]