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Package: pbbamtools (2.0.0+dfsg-2)

processing Pacific Biosciences binary alignment/map files

The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group.

PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information.

This package provides command-line utilities for working with PacBio BAM files.

Other Packages Related to pbbamtools

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libpbbam2.0.0 (= 2.0.0+dfsg-2)
    Pacific Biosciences binary alignment/map (BAM) library
  • dep: libpbcopper2.0.0 (>= 2.0.0+dfsg)
    data structures, algorithms, and utilities for C++ applications
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • rec: samtools
    processing sequence alignments in SAM, BAM and CRAM formats

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