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[ Source: smrtanalysis ]
Package: smrtanalysis-dev (0~20161126)
Links for smrtanalysis-dev
Trisquel Resources:
Download Source Package smrtanalysis:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Afif Elghraoui
External Resources:
- Homepage [www.pacb.com]
Similar packages:
develepment libraries for smrtanalysis
SMRT® Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences’ SMRT technology. Users can choose from a variety of analysis protocols that utilize PacBio® and third-party tools. Analysis protocols include de novo genome assembly, cDNA mapping, DNA base-modification detection, and long-amplicon analysis to determine phased consensus sequences.
This is a metapackage that depends on the SMRTAnalysis development tools.
Other Packages Related to smrtanalysis-dev
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- dep: libpbbam-dev
- Pacific Biosciences binary alignment/map (BAM) library (headers)
-
- dep: libpbseq-dev
- library for analyzing PacBio sequencing data (development files)
-
- dep: python-kineticstools
- detection of DNA modifications (Python 2 library)
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- dep: python-pbalign
- map Pacific Biosciences reads to reference DNA sequences (Python2)
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- dep: python-pbcommand
- common command-line interface for Pacific Biosciences analysis modules
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- dep: python-pbconsensuscore
- algorithms for PacBio multiple sequence consensus -- Python 2
- or python3-pbconsensuscore
- algorithms for PacBio multiple sequence consensus -- Python 3
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- dep: python-pbcore
- Python library for processing PacBio data files
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- dep: python-pbgenomicconsensus
- Pacific Biosciences variant and consensus caller (Python 2)
-
- dep: python-pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
Download smrtanalysis-dev
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 2.5 kB | 9 kB | [list of files] |