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Package: profbval (1.0.22-6)

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profbval

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Download Source Package profbval:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Laszlo Kajan
  • Christof Angermüller
  • Andreas Tille

External Resources:

Similar packages:

predictor of flexible/rigid protein residues from sequence

PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a crystallographer can locate residues that potentially have high experimental B-values.

PROFbval takes the following input, further described on profbval(1): 

 * a protein sequence in a FASTA file
 * secondary structure and solvent accessibility prediction by prof(1)
 * an HSSP file

Background: the mobility of a given residue on the protein surface is related to its functional role. Therefore, identification of extremely rigid or flexible residues on the protein surface is helpful for identifying functionally important residues in proteins. A common measure of atom mobility in proteins is B-value data from x-ray crystallography structures. PROFbval is the first tool to predict normalized backbone B-values from amino-acid sequence.

Other Packages Related to profbval

  • depends
  • recommends
  • suggests
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: profnet-bval
    neural network architecture for profbval
  • rec: blast2
    transitional dummy package to ncbi-blast+-legacy
  • rec: librg-utils-perl
    parsers and format conversion utilities used by (e.g.) profphd
  • rec: profphd
    Package not available

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Architecture Package Size Installed Size Files
all 58.4 kB258 kB [list of files]