Package: libfreecontact0v5 (1.0.21-7build1)
Links for libfreecontact0v5
Trisquel Resources:
Download Source Package freecontact:
- [freecontact_1.0.21-7build1.dsc]
- [freecontact_1.0.21.orig.tar.xz]
- [freecontact_1.0.21-7build1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Laszlo Kajan
- Andreas Tille
External Resources:
- Homepage [rostlab.org]
Similar packages:
fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the shared library implementing freecontact.
Other Packages Related to libfreecontact0v5
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- or libblas.so.3
- virtual package provided by libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libc6 (>= 2.15)
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also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgfortran5 (>= 8)
- Runtime library for GNU Fortran applications
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- dep: libgomp1 (>= 6)
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- or liblapack.so.3
- virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Download libfreecontact0v5
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 73.8 kB | 198 kB | [list of files] |
| armhf | 56.2 kB | 125 kB | [list of files] |