[  aramo  ]

Links for snpeff

Trisquel Resources:

• Bug Reports
• Changelog
• Copyright File
• Debian Source Repository (Git)

Maintainer:

• Debian Med Packaging Team (Mail Archive)

Original Maintainers:

• Debian Med Packaging Team (Mail Archive)
• Andreas Tille
• Pierre Gruet

External Resources:

• Homepage [pcingola.github.io]

The following binary packages are built from this source package:

libsnpeff-java

genetic variant annotation and effect prediction toolbox - lib

libsnpeff-java-doc

Documentation for Snp Effect

snpeff

genetic variant annotation and effect prediction toolbox - tool

Other Packages Related to snpeff

build-depends

build-depends-indep

• adep: debhelper-compat (= 13)

  Package not available

• adep: javahelper

  Helper scripts for packaging Java programs

• adep: default-jdk

  Standard Java or Java compatible Development Kit

• adep: default-jdk-doc

  Standard Java or Java compatible Development Kit (documentation)

• adep: maven-debian-helper

  Helper tools for building Debian packages with Maven

• adep: libmaven-assembly-plugin-java

  Maven Assembly Plugin

• adep: libtrove3-java

  high performance collections for java

• adep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• adep: libbiojava5-java

  Java API to biological data and applications (version 5)

• adep: junit5

  JUnit regression test framework for Java

• adep: libcommons-codec-java

  encoder and decoders such as Base64 and hexadecimal codec

• adep: libcommons-io-java

  Common useful IO related classes

• adep: libcommons-cli-java

  Command line arguments and options parsing library

• adep: libcommons-math3-java

  Java lightweight mathematics and statistics components

• adep: libfreemarker-java

  template engine written in Java

• adep: libjaxb-api-java

  Java Architecture for XML Binding API

• adep: libmaven-javadoc-plugin-java

  Maven Javadoc Plugin

• adep: libcommons-codec-java-doc

  encoder and decoders such as Base64 and hexadecimal codec - documentation

• adep: libcommons-io-java-doc

  Common useful IO related classes - documentation

• adep: libcommons-math3-java-doc

  Java lightweight mathematics and statistics components - documentation

• adep: libfreemarker-java-doc

  template engine written in Java (documentation)

• adep: libhtsjdk-java-doc

  Documentation for the java HTSJDK library

• adep: libbiojava5-java-doc

  [Biology] Documentation for BioJava 5

• adep: libtrove3-java-doc

  high performance collections for java

• adep: libcharts4j-java

  free, lightweight charts and graphs Java API

• adep: libapfloat-java

  high performance arbitrary precision arithmetic library for Java

• adep: libdistlib-java

  Java library of statistical distribution functions

Download snpeff

File	Size (in kB)	MD5 checksum
snpeff_5.1+dfsg-2.dsc	2.6 kB	2a6d6d7f5cff0b64d8593943473230ad
snpeff_5.1+dfsg.orig.tar.xz	130,898.6 kB	11464ddc1f5fd92b5ffb707f2235c877
snpeff_5.1+dfsg-2.debian.tar.xz	14.3 kB	44e0f0b26d64705ae80e0fda5fda6cfb

Debian Package Source Repository (VCS: Git)

https://salsa.debian.org/med-team/snpeff.git

Debian Package Source Repository (Browsable)

https://salsa.debian.org/med-team/snpeff