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Source Package: tophat (2.1.1+dfsg1-1)
Links for tophat
Trisquel Resources:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Carlos Borroto
- Alexandre Mestiashvili
- Andreas Tille
External Resources:
- Homepage [ccb.jhu.edu]
The following binary packages are built from this source package:
- tophat
- fast splice junction mapper for RNA-Seq reads
Other Packages Related to tophat
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|
-
- adep: debhelper (>= 10)
- helper programs for debian/rules
-
- adep: libbam-dev
- manipulates nucleotide sequence alignments in BAM or SAM format
-
- adep: zlib1g-dev
- compression library - development
-
- adep: python
- interactive high-level object-oriented language (default version)
-
- adep: seqan-dev (>= 1.4)
- C++ library for the analysis of biological sequences (development)
-
- adep: libboost-system-dev
- Operating system (e.g. diagnostics support) library (default version)
-
- adep: libboost-thread-dev
- portable C++ multi-threading (default version)
-
- adep: help2man
- Automatic manpage generator
-
- adep: bowtie
- Ultrafast memory-efficient short read aligner
Download tophat
| File | Size (in kB) | MD5 checksum |
|---|---|---|
| tophat_2.1.1+dfsg1-1.dsc | 2.1 kB | f44491ddbd21b177e89643d67e96d67d |
| tophat_2.1.1+dfsg1.orig.tar.xz | 341.8 kB | 9e350c80adba6b6fdc8045ef4e085800 |
| tophat_2.1.1+dfsg1-1.debian.tar.xz | 18.0 kB | 5a75b90ff458950cdd9667cbcea2a398 |
- Debian Package Source Repository (VCS: Git)
- https://anonscm.debian.org/git/debian-med/tophat.git
- Debian Package Source Repository (Browsable)
- https://anonscm.debian.org/cgit/debian-med/tophat.git