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Package: deepnano (0.0+20160706-1ubuntu1)

alternative basecaller for MinION reads of genomic sequences

DeepNano is alternative basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networks.

Currently it works with SQK-MAP-006 and SQK-MAP-005 chemistry and as a postprocessor for Metrichor.

Other Packages Related to deepnano

  • depends
  • recommends
  • suggests
  • dep: deepnano-data
    alternative basecaller for MinION reads of genomic sequences (data)
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-dateutil
    powerful extensions to the standard Python datetime module
  • dep: python-h5py
    general-purpose Python interface to hdf5 (Python 2)
  • dep: python-numpy
    Numerical Python adds a fast array facility to the Python language
  • dep: python-theano
    CPU/GPU math expression compiler for Python
  • rec: python-watchdog
    Python API and shell utilities to monitor file system events - Python 2.x

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Architecture Package Size Installed Size Files
amd64 18.9 kB89 kB [list of files]
i386 19.6 kB87 kB [list of files]