[ Source: r-bioc-genomicranges ]
Package: r-bioc-genomicranges (1.30.0-1)
Links for r-bioc-genomicranges
Trisquel Resources:
Download Source Package r-bioc-genomicranges:
- [r-bioc-genomicranges_1.30.0-1.dsc]
- [r-bioc-genomicranges_1.30.0.orig.tar.gz]
- [r-bioc-genomicranges_1.30.0-1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [bioconductor.org]
Similar packages:
BioConductor representation and manipulation of genomic intervals
The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.
Other Packages Related to r-bioc-genomicranges
|
|
|
-
- dep: libc6 (>= 2.4)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
-
- dep: r-api-3.4
- virtual package provided by r-base-core
-
- dep: r-base-core (>= 3.4.2-1ubuntu4)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-biocgenerics (>= 0.21.2)
- generic functions for Bioconductor
-
- dep: r-bioc-genomeinfodb (>= 1.13.1)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-iranges (>= 2.11.16)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-s4vectors (>= 0.9.47)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-xvector
- BioConductor representation and manpulation of external sequences
-
- sug: r-bioc-annotate
- BioConductor annotation for microarrays
-
- sug: r-bioc-annotationdbi (>= 1.21.1)
- GNU R Annotation Database Interface for BioConductor
-
- sug: r-bioc-annotationhub
- GNU R client to access AnnotationHub resources
-
- sug: r-bioc-biobase
- base functions for Bioconductor
-
- sug: r-bioc-biostrings (>= 2.25.3)
- GNU R string objects representing biological sequences
-
- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
-
- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
-
- sug: r-bioc-edger
- Package not available
-
- sug: r-bioc-genomicalignments
- BioConductor representation and manipulation of short genomic alignments
-
- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-bioc-gviz
- Plotting data and annotation information along genomic coordinates
-
- sug: r-bioc-rsamtools (>= 1.13.53)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-bioc-summarizedexperiment (>= 0.1.5)
- BioConductor assay container
-
- sug: r-bioc-variantannotation
- BioConductor annotation of genetic variants
-
- sug: r-cran-digest
- GNU R package for 'hash digest' of R data structures
-
- sug: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
-
- sug: r-cran-runit
- GNU R package providing unit testing framework
Download r-bioc-genomicranges
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 1,539.8 kB | 2134 kB | [list of files] |
| i386 | 1,534.1 kB | 2125 kB | [list of files] |