[ Source: bowtie2 ]
Package: bowtie2 (2.3.4.1-1)
Links for bowtie2
Trisquel Resources:
Download Source Package bowtie2:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Alexandre Mestiashvili
- Andreas Tille
External Resources:
- Homepage [bowtie-bio.sourceforge.net]
Similar packages:
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
Other Packages Related to bowtie2
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: libtbb2
- parallelism library for C++ - runtime files
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: zlib1g (>= 1:1.2.6)
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- sug: bowtie2-examples
- Examples for bowtie2
Download bowtie2
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 1,146.9 kB | 4980 kB | [list of files] |