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Package: libvcflib-tools (1.0.0~rc1+dfsg1-6)

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: 

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Other Packages Related to libvcflib-tools

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.23)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libfastahack0
    library for indexing and sequence extraction from FASTA files (lib)
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libsmithwaterman0
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: libtabixpp0
    C++ wrapper to tabix indexer
  • dep: libvcflib1
    C++ library for parsing and manipulating VCF files

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