[ Source: mash ]
Package: mash (2.0-2)
Links for mash
Trisquel Resources:
Download Source Package mash:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Sascha Steinbiss
External Resources:
- Homepage [mash.readthedocs.io]
Similar packages:
fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.
Other Packages Related to mash
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libcapnp-0.6.1
- Cap'n Proto C++ library
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- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
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- dep: libgsl23
- GNU Scientific Library (GSL) -- library package
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- dep: libgslcblas0
- GNU Scientific Library (GSL) -- blas library package
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download mash
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 140.1 kB | 410 kB | [list of files] |
| i386 | 153.2 kB | 445 kB | [list of files] |