Skip to content
Sections
>> Trisquel >> Packages >> etiona >> science >> pbhoney
etiona  ] [  nabia  ] [  aramo  ]
[ Source: pbsuite  ]

Package: pbhoney (15.8.24+dfsg-2)

genomic structural variation discovery

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

PBHoney is part of the PBSuite.

Other Packages Related to pbhoney

  • depends
  • recommends
  • suggests
  • dep: blasr (>= 5.3)
    mapping single-molecule sequencing reads
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-h5py (>= 2.0.1)
    general-purpose Python interface to hdf5 (Python 2)
  • dep: python-intervaltree-bio
    Interval tree convenience classes for genomic data -- Python 2 library
  • dep: python-networkx
    tool to create, manipulate and study complex networks
  • dep: python-numpy
    Numerical Python adds a fast array facility to the Python language
  • dep: python-pbbanana (= 15.8.24+dfsg-2)
    additional utilities for the pbsuite
  • dep: python-pbsuite-utils (= 15.8.24+dfsg-2)
    software for Pacific Biosciences sequencing data -- Python utilities
  • dep: python-pysam (>= 0.8.0)
    interface for the SAM/BAM sequence alignment and mapping format (Python 2)
  • dep: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: pbdagcon
    sequence consensus using directed acyclic graphs

Download pbhoney

Download for all available architectures
Architecture Package Size Installed Size Files
all 1,276.3 kB2353 kB [list of files]