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Package: psortb (3.0.5+dfsg-1ubuntu1)

bacterial localization prediction tool

PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes.

Other Packages Related to psortb

  • depends
  • recommends
  • suggests
  • dep: libalgorithm-svm-perl
    bindings for the libsvm Support Vector Machine library
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libmodhmm0
    library for constructing, training and scoring hidden Markov models
  • dep: libsquid1
    biosquid dynamic library for biological sequence analysis
  • dep: libstdc++6 (>= 5)
    GNU Standard C++ Library v3
  • dep: libsvm3
    library implementing support vector machines
  • dep: libsvmloc0
    PSORTb adapted library for svm machine-learning library
  • dep: perl (>= 5.26.1-5)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.26.1
    virtual package provided by perl-base
  • dep: pftools
    build and search protein and DNA generalized profiles

Download psortb

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Architecture Package Size Installed Size Files
amd64 15,861.9 kB115730 kB [list of files]