Package: repeatmasker-recon (1.08-3)
Links for repeatmasker-recon
Trisquel Resources:
Download Source Package repeatmasker-recon:
- [repeatmasker-recon_1.08-3.dsc]
- [repeatmasker-recon_1.08.orig.tar.gz]
- [repeatmasker-recon_1.08-3.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Olivier Sallou
- Andreas Tille
External Resources:
- Homepage [www.repeatmasker.org]
Similar packages:
finds repeat families from biological sequences
The RECON package implements a de novo algorithm for the indentification of repeat families from biological sequences.
The program implements an approach for the de novo identification and classification of repeat sequence families that is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. The extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. When tested on the human genome, this approach was able to properly identify and group known transposable elements. The program, should be useful for first-pass automatic classification of repeats in newly sequenced genomes.
Other Packages Related to repeatmasker-recon
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- dep: libc6 (>= 2.7)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
Download repeatmasker-recon
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 98.7 kB | 223 kB | [list of files] |
i386 | 97.9 kB | 219 kB | [list of files] |